Teaching Evolution

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healyje

Trad climber
Portland, Oregon
Feb 22, 2012 - 01:55pm PT
Largo - So we're just going to swap out 'mind' for 'life' and have the same merry-go-round session all over again where you can't be pinned down to proffer anything except the improbability of it all? Really - is that as good as it gets?

I'm simply pointing out that there are some serious leaps in logic in explaining the "creation" of things. It seems that many insist that things are just so, but can offer nothing much to demonstrate the mechanism by which, for instance, one of the most complicated widgets in the galaxy - the DNA helix - can emerge, entirely undirected, from the primordial soup - other than - by God, it just "happened," or the statistics indicate . . . Or by weaving remarkably poetic pictures of the caldron of creation with all that heat and those anxious gasses and hellfire and pressures and volcanoes and the dad-burn helix crept outta the mud because it took it's sweet time, like billions of years, and accomplished it's goal by way of indescribably small steps, and failed a gazillion times, but it just happened anyhow because . . . . And how stupid I am and not understanding the complexity of evolution because the fosile record says this and that.

And no, I'm not suggesing that an external Intelligent Design model or Big Dad in the sky directed the whole shebang. I am simply, as usual, just raising questions that pester me.

Simply because there are fundamental elements in motion, they will bump into each other and quite possibly bond as their properties allow and through a billion different combinations they might end up in complex combinations that survive or not according to various factors. However in the real world, the one we live in, which is strictly a material world according to some, remarkably complex things never simply organize themselves without some internal or external direction and most of all, without some intentionality. What we have here is a thesis saying that this intentionality and the mechanism by which the helix arose are the same things, meaning the intentionality and matter are not separate, just as gravity does not exist separate from matter.

At this point it would seem that mater has inherent intentionality. The sticking point is to insist that this inherent intentionality has no inherent smarts or intelligence, but can produce, by way of blind chance, something that we, with all our brain power, could only understand and appreciate in recent times. And then to go on and say, Ain't it grand, how Nature simply does this "on it's own." It is this "on it's own," with the implication that there is no intelligence or intentionality at play, that makes me wonder, considering the complexity of life. What does this, "on it's own," actually mean?

I'm not saying this is not so - as unlikely as it seems - but if it did, it is so miraculous that it makes Jesus Christ walking on water look like a 5.1 slab.

JL

Largo, that's actually all quite helpful - 'intentionality' that is. I can easily imagine that [unassigned] 'intentionality' would definitely stick in a philosopher's craw. That also helps relative to the 'mind' thread as well (at least for me) with regard to your not necessarily assigning or attaching intentionality (or design) to any 'one' or thing in particular, but rather just noting the required leaps.

I think HFCS speaks to my thoughts on the 'intentionality of matter' with this comment:

I suppose if one wanted, he could personify a Na atom and a H20 molecule and then say they "intend" to get together or that they "desire" to get together to make sodium hydroxide. In this manner of speaking, the matter (of Na and H20) would have "intentionality."

In a very real sense 'form' (and function) can't be realized without some form of innate molecular / chemical / physical 'intentionality', and I suppose Ed could better address that issue, but I would think the root source of such intentionality would lie in the comsological constant / parameters responsible for this universe. That of course gets Jonnnyyyzzz all anthropically hot and bothered, but is not a cause for confusing the improbable with the impossible.

And I think it's that gap in our immediate knowledge combined with the improbability of it all in combination with a fear of the unknown that sucks folks down the ID rabbit hole. But then I can see that being entirely separate from intentionality really bugging the sh#t out of a philosopher.

P.S. With regard to DNA and the origins of 'life', this is not a bad commentary on where many believe we are currently at on that topic:

http://en.wikipedia.org/wiki/RNA_world_hypothesis

http://www.panspermia.org/rnaworld.htm


Jonnnyyyzzz

Trad climber
San Diego,CA
Feb 22, 2012 - 02:12pm PT
OK, That's all I can stand for now. Its always fun postulating with you guys but I think I'll go climbing for the afternoon. Anyone in SD want to join me?
WBraun

climber
Feb 22, 2012 - 03:59pm PT
A computer is never life.

It takes a life force to turn it on.

Life comes from life,

Life never comes from matter.

There's no religion required to see that ....
Marlow

Sport climber
OSLO
Feb 22, 2012 - 04:06pm PT
...says the man claiming to be linked to the main server of life...

serving us all...

... and still in hell.
Largo

Sport climber
The Big Wide Open Face
Feb 22, 2012 - 04:41pm PT
Base 104 I don't want to speak for largo but I think the 747 he and others are talking about is the first life and the need for vast amounts of genetic info in DNA needed for RNA to transcribe said genetic info to then order the many amino acids into very specific strings that would somehow be then get folded into the many specific proteins that would need to be put together in order (like a 747 is put together in order) all at the same exact time in the same microscopic cell sized place and have it all instantly start working together to preform the very complex functions needed for survival (in whatever kind of environment was present where and when this would have taken place) of even the simplest of single cell life.
-

This crazy run-on from Johnnyzzzz - who I can never really understand - does pin down an interesting phase in evolution which predates when natural selection would kick in. Especially this part: "The need for vast amounts of genetic info in DNA needed for RNA to transcribe said genetic info to then order the many amino acids into very specific strings that would somehow be then get folded into the many specific proteins."

Now the common retort here is some version or another of "this is simply what amino acids do."

If they "do" this instead of that, what they "do" can happen only one of two ways: Either the acids combine as directed by software ie DNA/RNA, or they just happened together by sheer coincidence, because "that's what they do."

I'm all for Nature figuring things out, but doing so sans brain or intelligence, or without an inherent pattern - the world seems unlikely.

JL
healyje

Trad climber
Portland, Oregon
Feb 22, 2012 - 04:50pm PT
See those 'RNA World' links I just posted up for a better feel for it all. Few scientists think life did the leap straight to DNA. And 'improbable', 'implausible', and 'unlikely' still don't add up to 'impossible'. Again, if you look at the mechanisms of life it's clear there are so many ridiculous, gruesome, or flatout outlandish mechanisms at work that no one would claim responsibility for 'designing'.
High Fructose Corn Spirit

Gym climber
-A race of corn eaters
Feb 22, 2012 - 05:10pm PT
predates when natural selection would kick in

what does this mean?

Natural selection was there from the beginning.

In the beginning... there was a small population of crude replicator molecules... a fraction of which were more fit in terms of survivability (incl existability and replicability). The difference in variation across the population meant the race was on...

Few scientists think life did the leap straight to DNA.

Of course not. Only those not constrained by an understanding of evolutionary biology would even suggest so. It's a red herring, as you know, esp popular among the ID / divine creation proponents.
Largo

Sport climber
The Big Wide Open Face
Feb 22, 2012 - 06:36pm PT
predates when natural selection would kick in

what does this mean?

Natural selection was there from the beginning.

In the beginning... there was a small population of crude replicator molecules


Can you see the hitch in this argument? It harkens back to the old big bang theories. The whole thing came from nothing. Well, actually, in the beginning, there was this super small peanut with the virtually infinite density, but not quite infinite . . .

Discuss the transition from elemental particles to "crude replicator cells."

From people like Ed we hear about the laws of physics that govern just about everything observable. Are we to now understand that said replicator molecules simoly "happened" outside the purview of said laws?

In one of the Healj articles it mentions the major transitional phases in evolution, which does not include the transition from basic elements to simple replicating molecules.

Also listed was his whopper:

n August 8, 2011, a report, based on NASA studies with meteorites found on Earth, was published suggesting building blocks of RNA (adenine, guanine and related organic molecules) may have been formed extraterrestrially in outer space.

For real? Who is actually taking this seriously?

JL
High Fructose Corn Spirit

Gym climber
-A race of corn eaters
Feb 22, 2012 - 06:58pm PT
For real? Who is actually taking this seriously?

What do you mean? It's an awesome fact/finding but there's nothing that's stretches credibility or imagination about this finding. Fits the (physichemical) model perfectly well.

.....

Hey, I can see that you're digging into this stuff block by block. Like honey badger. I can see you fleshing out the puzzle. Everyday another piece. Everyday you see more and more of the Evolutionary Epic.

A few semesters of organic chemistry is a big help in coming to terms with simple complex molecules and their extraordinary versatility and variation. Carbon chemistry it seems knows no bounds.

healyje

Trad climber
Portland, Oregon
Feb 22, 2012 - 08:28pm PT
Largo: For real? Who is actually taking this seriously?

Lots of radio astronomers and astrobiologists for a starter...

August 30, 2011

Antarctica Meteorite Hints at Extraterrestrial Origins for Prebiotic Molecular Evolution

Ammonia found in a carbon-containing meteorite from Antarctica adds to a growing body of evidence that meteorites may have played a key role in the development of life here. The NASA image above below was released early this year, when researchers reported that meteorites may have also delivered Earth’s first left-hand amino acids.

“Given that meteorites and comets have reached the Earth since it formed, it has been proposed that the exogenous influx from these bodies provided the organic inventories necessary for the emergence of life," said lead researcher Sandra Pizzarello, of Arizona State University.

The carbonaceous meteorites of the Renazzo-type family (CR) are known to be especially rich in small soluble organic molecules, such as the amino acids glycine and alanine. To test for the presence of ammonia, the researchers collected powder from the much-studied CR2 Grave Nunataks (GRA) 95229 meteorite and treated it with water at high temperature and pressure. They found that the treated powders emitted ammonia, NH4, an important precursor to complex biological molecules such as amino acids and DNA, into the surrounding water

The researchers then analyzed the nitrogen atoms within the ammonia and determined that the atomic isotope did not match those currently found on Earth, eliminating the possibility that the ammonia resulted from contamination during the experiment. Researchers have struggled to pinpoint the origin of the ammonia responsible for triggering the formation of the first biomolecules on early Earth. It now appears that they have found it.

“The findings appear to trace CR2 meteorites’ origin to cosmochemical regimes where ammonia was pervasive, and we speculate that their delivery to the early Earth could have fostered prebiotic molecular evolution,” they write.

DNA Building Blocks Found in Carbon-Rich Meteorites

A team of GCA scientists M. Callahan, J. Stern, D. Glavin. J. Dworkin and their co-investigators found diverse suite of nucleobases and terrestrially rare nucleobase analogs in twelve carbon-rich meteorites. These include denine and guanine, as well as hypoxanthine and xanthine DNA resembles a spiral ladder; adenine and guanine connect with two other nucleobases to form the rungs of the ladder. They are part of the code that tells the cellular machinery which proteins to make. Hypoxanthine and xanthine are not found in DNA, but are used in other biological processes. The discovery adds to a growing body of evidence that asteroids and meteorites are chemical 'factories' that may have been important sources of organic compounds required for the emergence of life on the early Earth. The discovery of new nucleobase analogs in meteorites also expands the prebiotic molecular inventory available for constructing the first genetic molecules. 08.08.11

Variations of Gas Release from Comet Hartley-2

GCA scientists, Drs. Mumma, Bonev, Villanueva, Paganini, DiSanti and an international team of co-investigators measured episodic and spatial variations of eight primary volatiles (H2O, HCN, CH4, C2H6, CH3OH, C2H2, H2CO, and NH3) and two product species (OH and NH2) in comet 103P/Hartley 2 using high-dispersion infrared spectroscopy with large ground-based telescopes in Hawaii and Chile. The primary species were released directly from the comet nucleus, while the product species were produced in the coma. The team quantified the long- and short-term production rates of these volatiles over a three-month interval from October to December 2010 that encompassed the comet’s close approach to Earth, its perihelion passage, and flyby of the comet by the Deep Impact spacecraft during the EPOXI mission. The short-term variations were consistent with nucleus rotation when compared with other observations. These measurements helped to determine the composition of Hartley-2, which is the only comet from the Kuiper Belt to be so categorized. 5.17.2011

NASA Researchers Make First Discovery of Life's Building Block in Comet - 08.17.09

NASA scientists have discovered glycine, a fundamental building block of life, in samples of comet Wild 2 returned by NASA's Stardust spacecraft.

"Glycine is an amino acid used by living organisms to make proteins, and this is the first time an amino acid has been found in a comet," said Dr. Jamie Elsila of NASA's Goddard Space Flight Center in Greenbelt, Md. "Our discovery supports the theory that some of life's ingredients formed in space and were delivered to Earth long ago by meteorite and comet impacts."

Elsila is the lead author of a paper on this research accepted for publication in the journal Meteoritics and Planetary Science. The research will be presented during the meeting of the American Chemical Society at the Marriott Metro Center in Washington, DC, August 16.

"The discovery of glycine in a comet supports the idea that the fundamental building blocks of life are prevalent in space, and strengthens the argument that life in the universe may be common rather than rare," said Dr. Carl Pilcher, Director of the NASA Astrobiology Institute which co-funded the research.

Proteins are the workhorse molecules of life, used in everything from structures like hair to enzymes, the catalysts that speed up or regulate chemical reactions. Just as the 26 letters of the alphabet are arranged in limitless combinations to make words, life uses 20 different amino acids in a huge variety of arrangements to build millions of different proteins.

Stardust passed through dense gas and dust surrounding the icy nucleus of Wild 2 (pronounced "Vilt-2") on January 2, 2004. As the spacecraft flew through this material, a special collection grid filled with aerogel – a novel sponge-like material that's more than 99 percent empty space – gently captured samples of the comet's gas and dust. The grid was stowed in a capsule which detached from the spacecraft and parachuted to Earth on January 15, 2006. Since then, scientists around the world have been busy analyzing the samples to learn the secrets of comet formation and our solar system's history.

"We actually analyzed aluminum foil from the sides of tiny chambers that hold the aerogel in the collection grid," said Elsila. "As gas molecules passed through the aerogel, some stuck to the foil. We spent two years testing and developing our equipment to make it accurate and sensitive enough to analyze such incredibly tiny samples."

Earlier, preliminary analysis in the Goddard labs detected glycine in both the foil and a sample of the aerogel. However, since glycine is used by terrestrial life, at first the team was unable to rule out contamination from sources on Earth. "It was possible that the glycine we found originated from handling or manufacture of the Stardust spacecraft itself," said Elsila. The new research used isotopic analysis of the foil to rule out that possibility.

Isotopes are versions of an element with different weights or masses; for example, the most common carbon atom, Carbon 12, has six protons and six neutrons in its center (nucleus). However, the Carbon 13 isotope is heavier because it has an extra neutron in its nucleus. A glycine molecule from space will tend to have more of the heavier Carbon 13 atoms in it than glycine that's from Earth. That is what the team found. "We discovered that the Stardust-returned glycine has an extraterrestrial carbon isotope signature, indicating that it originated on the comet," said Elsila.

The team includes Dr. Daniel Glavin and Dr. Jason Dworkin of NASA Goddard. "Based on the foil and aerogel results it is highly probable that the entire comet-exposed side of the Stardust sample collection grid is coated with glycine that formed in space," adds Glavin.

"The discovery of amino acids in the returned comet sample is very exciting and profound," said Stardust Principal Investigator Professor Donald E. Brownlee of the University of Washington, Seattle, Wash. "It is also a remarkable triumph that highlights the advancing capabilities of laboratory studies of primitive extraterrestrial materials."

The research was funded by the NASA Stardust Sample Analysis program and the NASA Astrobiology Institute. NASA's Jet Propulsion Laboratory, Pasadena, Calif., manages the Stardust mission for NASA's Science Mission Directorate, Washington. Lockheed Martin Space Systems, Denver, developed and operated the spacecraft.

To learn more about the mission, visit http://stardustnext.jpl.nasa.gov/ .
healyje

Trad climber
Portland, Oregon
Feb 22, 2012 - 09:41pm PT
Dr. F: I have problems accepting that Life could have come from a meteorite or planted here by aliens. No life can make it through a descent into the atmosphere and not burn up into dust.

I'm fully on board with the possibility sulfur-based life developed on earth using the water present when the planet formed. However, I find it hard to believe some quantity of extra-terrestrial water wasn't deposited on the planet post-formation and I don't buy that all of that water was pure or sanitized of all organics on entry.
healyje

Trad climber
Portland, Oregon
Feb 22, 2012 - 09:48pm PT
Sounds like it's still heavily debated...

http://en.wikipedia.org/wiki/Origin_of_water_on_Earth
Largo

Sport climber
The Big Wide Open Face
Feb 22, 2012 - 09:54pm PT
Still, as we argue about whether our pappy was an alien or not, the transition from elemental particles to the first duplicating molecule remains unanswered - as if anywhere in physics, or life, it "just happened" is accepted as a viable answer.

The original idea that nothing is created but everything is always in flux, starts making more and more sense.

JL
Psilocyborg

climber
Feb 22, 2012 - 10:05pm PT
I have problems accepting that Life could have come from a meteorite or planted here by aliens.

No life can make it through a descent into the atmosphere and not burn up into dust.

What we have learned here on earth is that life can thrive anywhere, under any condition.


corniss chopper

climber
breaking the speed of gravity
Feb 22, 2012 - 10:23pm PT
Skywalker - its been awhile since the last monkey trial. Maybe we need another just for fun.

That a State actually passed a law forbidding evolution from being taught is
so strange.

One of those -you're sh#@%ting me, right? episodes of American history.

Teach evolution -go to jail.

http://political-descent.blogspot.com/2011/04/politics-of-evolution-in-classroom.html
corniss chopper

climber
breaking the speed of gravity
Feb 22, 2012 - 10:42pm PT
Youtube - Scopes Monkey Trial 1 of 8. 10mins each

http://www.youtube.com/watch?v=xOgI0b-tEAg


WBraun

climber
Feb 22, 2012 - 10:49pm PT
Life wasn't created.

Makes fact.

Then
"we haven't completely figured out yet."

Actual translation = "Gee wiz, I really have no clue ...."
healyje

Trad climber
Portland, Oregon
Feb 22, 2012 - 10:51pm PT
Pappy's elements are definitely alien born of stars - we're all alien in that regard. And whether organic chemistry formed with the earth from material in our sun's disk or was deposited after the fact still means it was originally extraterrestrial. All we're really talking about here is the plausible self-assembly and replication of molecules. Self-assembly borders on commonplace these days, self-replicating is another matter and the field of self-replication chemistry is a fairly modern endeavor.

All that said, I find it fascinating you (and I see Werner as well) seem unwilling to accept that discovery and learning is a process that takes place over time. The fact we don't currently understand or have an answer to a particular question or phenomenon appears to be highly problematic for you - as though you think we somehow deserve to know right now or should be able to just sit down and spit out an answer. I personally don't see why, in absence of a current answer, we should just leap to either the supernatural or be boggled by the 'impossibility' of it all.

Are philosophers all this impatient? I've never even considered the idea of instant intellectual gratification. Seems all very 'Ericksonian' in that walk-away-if-you-don't-get-the-FA sort of way...
StahlBro

Trad climber
San Diego, CA
Feb 22, 2012 - 11:12pm PT
I actually thought of crystals as transitional forms. But something has to make them adaptable. I am not sure they evolve. But there must be something about carbon.

http://www.youtube.com/watch?v=3pv7_G23EU0

"Parting Of The Sensory"

There's no work in walking in to fuel the talk
I would grab my shoes and then away I'd walk
Through all the stubborn beauty I start at the dawn
Until the sun had fully stopped
Never walking away from
Just a way to pull apart
Dehydrate back into minerals
A life long walk to the same exact spot

Carbon's anniversary
The parting of the sensory
Old old mystery
The parting of the sensory

Who the hell made you the boss?
We placed our chips in all the right spots
But still lost
Any sh*thead who had ever walked
Could take the ship and do a much finer job
This fit like clothes made out of wasps
Aw, f*ck it I guess I lost

The parting of the sensory
Carbon's anniversary
Just part it again if you please
Carbon's anniversary

Who the hell made you the boss
If you say what to do I know what not to stop
If you were the ship then who would ever get on
The weather changed it for the worse
And came down on us like it had been rehearsed
And like we hope, but change will surely come
And be awful for most but really good for some
I took a trip to the exact same spot
We pulled the trigger, but we forgot to c*#k
And every single shot

Aw, f*ck it I guess we lost

Some day you will die and
Somehow something's going to steal your carbon

Some day you will die and
Somehow something's going to steal your carbon

Well some day you will die somehow and
Something's going to steal your carbon

Some day you will die and
Someone's or something's will steal your carbon

Some day something will die and
Somehow you'll figure out how
Often you will die somehow and
Something going to steal your carbon

Well some day you will die somehow and
Something's going to steal your carbon
BASE104

Social climber
An Oil Field
Feb 23, 2012 - 12:49am PT
JL, there is a lot of work going on regarding the origin question. Not as much as goes on at a zillion dollar company like Monsanto, but there is a population of people who ponder it.

Natural selection is a simple idea that absolutely must follow life.

Natural selection is used in evolutionary computing. That is where computers are programmed to design things. I need to look it up, but I believe that cell phones were designed using evolutionary computing.

It is pretty easy to write a computer program that evolves, makes parasites, all kinds of stuff after you get it running. I am friends with the guy who wrote the first program that evolved and was pretty famous for a while.

I have had many great talks with him, and have tossed him hard questions such as the origin question. If you get any chemical that self replicates, it is subject to natural selection. If it evolves one way and gets whacked out of existence from something else, then things move along.

By some measures, such as in Dawkin's The Selfish Gene, bacteria are the most successful life on the planet. They rule in terms of numbers, and have been succesful for at least a few billion years. Bacteria can make stromatolite fossils, which are piss easy to identify. Stromatolites showed up in the oldest fossils from billions of years ago.

My buddy does not ascribe to the Dawkins point of view. He thinks that evolution, at least in part, has lead to more and more complicated life, and thinks it is cool that we now will have to include microwave ovens in the future fossil record.

Natural selection is an easy idea. It applies to all sorts of situations besides evolution.
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